Compiling Samtools

Prerequisites

• bcftools (which brings in other dependencies)

Configure

Environment Variables

LDFLAGS="-L/ifs/opt/openblas/dynamic/0.3.20/lib -Wl,-rpath,/ifs/opt/openblas/dynamic/0.3.20/lib"

Configure

./configure --prefix=foo --enable-largefile --with-htslib=$HTSLIBDIR --with-ncurses