NSF-TUES Bioinformatics Course

This article contains some information for Dr. Gail Rosen's ECES 490/690 bioinformatics course.

Environment Setup

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Most software required for the course is available via the modulefile qiime/gcc/64/1.8.0. Note that if you have any Python modules that you installed yourself into ~/.local/, it will probably conflict with the system installation.

To set up your environment, do:

[juser@picotte001 ~]$ module load qiime

IMPORTANT:

• Make sure that you do not have the environment variable PYTHONPATH set, either by yourself or any other software package you use.
• Make sure that you do not have a directory ~/.local/, unless you know how to resolve conflicts between Python modules

See Also

• QIIME
• Python