SeqLib

SeqLib is a C++ interface to HTSlib, BWA-MEM and Fermi.[1][2]

Citation

If you use SeqLib, please cite: SeqLib: a C++ API for rapid BAM manipulation, sequence alignment and sequence assembly, J. Wala and R. Beroukhim, Bioinformatics, 33(5), 2017, 751–753, DOI: 10.1093/bioinformatics/btw741

Installed Version

The main branch of SeqLib is installed on Picotte. It provides static libraries:

seqlib/intel/2020/git

The library path is given by:

     $SEQLIBDIR/lib

References

[1] SeqLib GitHub repository

[2] SeqLib: a C++ API for rapid BAM manipulation, sequence alignment and sequence assembly, J. Wala and R. Beroukhim, Bioinformatics, 33(5), 2017, 751–753, DOI: 10.1093/bioinformatics/btw741