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PBSuite

PBSuite contains PBJelly (a genome upgrading tool), and PBHoney (a structural variation discovery tool).[1]

Installed Version

Version 15.2.20 is installed on Proteus. It uses BLASR 1.3.1. To use, load the module

pbsuite/15.2.20

Note:

  • this uses Python 2.7.9
  • this also sets the PYTHONPATH environment variable, which may break Python for you (i.e. Python modules may not be found, the wrong version of modules may be loaded, etc)

References

[1] PBSuite SourceForge page