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Biopython

Picotte

Biopython is available in a Conda environment, using the "python/anaconda3" Python installation. See: Anaconda#URCF-Installed Anaconda

The Conda environment is:

bioconda

Do "conda activate bioconda" once your environment is set up to use Anaconda.

To see all installed packages, do:

conda list

There are a few hundred packages in the conda environment, including:

  • biopython
  • blast
  • bwa
  • hmmer
  • mothur
  • ncbi-ngs-sdk
  • perl-bio*
  • spades