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University Research Computing Facility
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    • URCF Knowledgebase
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      • Picotte
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        • Proteus Hardware and Software
    • Data
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      • Checking usage
    • External
      • ACCESS
      • CIPRES Science Gateway
      • Commercial cloud resources
      • NSF-TUES Bioinformatics Course
    • Learning
        • SSH Keys for Passwordless Logins
        • Connecting via SSH
        • Visual Studio Code setup
      • Linux
        • Text Editors
        • Multi-Factor Authentication
        • Using Environment Modules
        • Hybrid MPI-OpenMP Jobs
        • NFSv4 ACLs
        • Permissions
        • Processes
      • Sessions
        • Lightning Talks
        • Workshop and Training Archives
      • Slurm
        • Slurm Glossary
        • Interactive Terminal Sessions on Compute Nodes
        • Historical Job Data in Slurm
        • Frequently Encountered Problems
        • Slurm Reference
        • Running GUI Applications on Compute Nodes
        • Job Scheduling
        • Troubleshooting Slurm Jobs
        • Slurm Utility Commands
        • Writing Slurm Job Scripts
        • Examples
          • Running an Anaconda script as a Slurm job
          • Job Dependencies
          • Slurm - Job Script Example 02 Many Input Files
          • Slurm - Job Script Example 02a Many Input Files in Separate Directories with Python
          • Processing Many Sequentially Named Input Files
          • Slurm - Job Script Example 09 Mathematica
          • Slurm - Job Script Example 06 Matlab
          • Slurm - Job Script Example 04 Python
          • Stata
          • Slurm - Job Script Example 05a TensorFlow With Anaconda Python
          • Slurm - Job Script Example 08a TensorFlow multi-GPU using virtualenv
          • Slurm - Job Script Example 05 TensorFlow Singularity
          • Slurm - Job Script Example 08 TensorFlow using virtualenv
      • Tips
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        • Tips for Windows Users
    • News
    • Overview
    • Procedures
      • Colocation
      • Accessing the URCF
      • Terms of Use
      • Acknowledgement
      • Facility Description for Proposals
      • Managing Multiple Projects
      • Onboarding for PIs
    • Software
      • Licenses
      • Installing or Requesting New Software
        • Compiling ABINIT
        • Compiling ABySS
        • Compiling ANTs
        • Compiling AmberTools
        • Compiling AmpliconNoise
        • Compiling AutoDock Vina
        • Compiling BCFtools
        • Compiling BLASR
        • Compiling Boost
        • Compiling Burrows-Wheeler Aligner
        • Compiling CDBFASTA
        • Compiling CMAQ
        • Compiling CMAQ New
        • Compiling CMake
        • Compiling Caffe
        • Compiling Celera Assembler
        • Compiling Clustal W and Clustal Omega
        • Compiling EnergyPlus
        • Compiling ExaBayes
        • Compiling FFTW
        • Compiling FastTree
        • Compiling GAML
        • Compiling GEOS-Chem Classic
        • Compiling GEOS-Chem High Performance
        • Compiling GROMACS
        • Compiling HDF5
        • Compiling HDF5 1.8
        • Compiling HMMER
        • Compiling High Performance Linpack (HPL)
        • Compiling HyPhy
        • Compiling Infernal
        • Compiling LAMMPS
        • Compiling LAPACK
        • Compiling LLVM
        • Compiling MAGMA
        • Compiling MMC (Mesh-based Monte Carlo)
        • Compiling MUSCLE
        • Compiling Meraculous
        • Compiling Mothur
        • Compiling NAMD
        • Compiling NCBI BLAST
        • Compiling NCBI C++ Toolkit
        • Compiling NCBI NGS
        • Compiling NCBI SRA Toolkit
        • Compiling NetCDF
        • Compiling OpenBLAS
        • Compiling OpenFOAM.com v1806
        • Compiling OpenFOAM.com v2212
        • Compiling OpenFOAM
        • Compiling OpenFOAM.org 10 and dev
        • Compiling OpenFOAM 3.0.x
        • Compiling OpenFOAM 6
        • Compiling OpenMM
        • Compiling OpenMPI
        • Compiling PETSc
        • Compiling ParaView HPC
        • Compiling Prodigal
        • Compiling Python
        • Compiling Quantum Espresso
        • Compiling Quick Start Guide
        • Compiling R
        • Compiling RAxML and ExaML
        • Compiling SPRNG
        • Compiling Samtools
        • Compiling SmashCommunity
        • Compiling Software - A General Guide
        • Compiling SortMeRNA
        • Compiling Tensorflow
        • Compiling Treemix
        • Compiling Trinity RNA-Seq
        • Compiling VASP
        • Compiling VMD
        • Compiling VOTCA
        • Compiling Velvet
        • Compiling VinaLC
        • Compiling Vowpal Wabbit
        • Compiling Xerces C++
        • Compiling clearcut
        • Compiling crass
        • Compiling foam-extend
        • Compiling for AMD with Open64
        • Compiling for Intel with Intel Composer XE, MKL, and Intel MPI
        • Compiling h5py
        • Compiling hapbin
        • Compiling kraken
        • Compiling libcrispr
        • Compiling libtiff
        • Compiling pplacer
        • Compiling with GCC
        • Installing TensorFlow 2.10.1 using pip and venv
        • Installing TensorFlow 2.11.0 using pip and venv
        • Installing TensorFlow 2.9.3 using pip and venv
      • Installed
        • ANSYS Fluent
        • Anaconda
        • Anvi'o
        • Apache Spark
        • Atomsk
        • Augustus
        • AutoDock Vina
        • Autoconf
        • BEAGLE
        • BLAST Databases
        • BWA-MEM2
        • BWA
        • Bazel
        • Bedtools
        • Berkeley Lab Checkpoint Restart
        • Bioconductor
        • Biopython
        • Bowtie
        • CFM-ID
        • CMAQ
        • CRISPR-related Software
        • Caffe
        • Code Profilling
        • Cytoscape
        • DIAMOND
        • Docker
        • EA-utils
        • EnergyPlus
        • Exonerate
        • FEniCS
        • FastQC
        • GEOS-Chem Classic
        • GEOS-Chem ExtData
        • GEOS-Chem High Performance
        • GNU Parallel
        • GNU Scientific Library
        • GPU Jobs on Picotte
        • GPU Memory Limits for BERT
        • GROMACS
        • Gensim
        • Git
        • Grinder
        • GroopM
        • HDF5
        • HPN-SSH
        • IDBA-UD
        • IQ-TREE
        • Intel oneAPI
        • Java
        • Jellyfish
        • Julia
        • Julia in Jupyter
        • Jupyter
        • JupyterLab
        • Jupyter via VS Code
        • Kallisto
        • Keras
        • Kmcuda
        • LAMMPS
        • LIBSVM
        • LS-Dyna
        • Lighter
        • MAFFT
        • MATLAB
        • MEGAHIT
        • MMseqs2
        • Mathematica
        • MetaBat2
        • Minimap2
        • Monitoring
        • NAMD
        • NCBI BLAST
        • NCBI SRA Toolkit
        • NGC Deep Learning Example
        • NVIDIA CUDA on Picotte
        • NVIDIA GPU Cloud Containers
        • NetCDF
        • NetLogo
        • Nextflow
        • Nf-core-mag
        • ORCA
        • Octave
        • OpenFOAM
        • OpenMM
        • OpenMP
        • OpenSHMEM
        • Open Babel
        • PBSuite
        • PETSc
        • PICRUSt
        • PILER-CR
        • PILER
        • PROJ
        • ParaView
        • Perl
        • Phyluce
        • PhymmBL
        • PyRAD
        • Pypar
        • Python
        • Python virtual environments
        • QIIME
        • Quantum Espresso
        • R
        • R in Jupyter
        • Racket
        • Ray
        • Rclone
        • Restic
        • Ruby
        • Samtools
        • SAS
        • SCAT
        • SPAdes
        • Salmon
        • Sample TensorFlow Datasets
        • Schrodinger
        • Scikit-learn
        • SeqLib
        • SeqPrep
        • Seqkit
        • Singularity
        • Spack
        • Stata
        • Stata in Jupyter
        • Statement on Data Loss
        • Strelka2
        • Subread
        • SuiteSparse
        • TeX Live
        • TensorFlow
        • Trinity for RNA-Seq De novo Assembly
        • URMAP
        • VDB
        • VSEARCH
        • Vcftools
        • VinaLC
        • Zlib
        • Zstd
        • AlphaFold
        • COMSOL
        • mkdocs migration
        • MPI for Python
      • Jupyterhub
    • Support

    Index

    • AlphaFold2
    • ANSYS_Fluent
    • Anvi'o
    • Apache_Spark
    • Atomsk
    • Augustus
    • Autoconf
    • AutoDock_Vina
    • Bazel
    • SAMtools
    • Seqkit
    • BEAGLE
    • Bedtools
    • Bioconductor
    • BLAST_Databases
    • Berkeley_Lab_CheckpointRestart
    • Bowtie
    • BWA
    • BWA-MEM2
    • Caffe
    • CFM-ID
    • GroopM
    • CMAQ
    • Docker
    • Singularity
    • COMSOL_Multiphysics
    • CRISPR-related_Software
    • Cytoscape
    • DIAMOND
    • EA-utils
    • EnergyPlus
    • Exonerate
    • FastQC
    • GEOS-Chem_Classic
    • GEOS-Chem_ExtData
    • GEOS-Chem_High_Performance
    • Git
    • GNU_Parallel
    • GNU_Scientific_Library
    • Code_Profilling
    • Grinder
    • GROMACS
    • GroopM
    • HDF5
    • HPN-SSH
    • SAMtools
    • IDBA-UD
    • Intel_oneAPI
    • IQ-TREE
    • Java
    • Jellyfish
    • Julia
    • Jupyter
    • JupyterLab
    • Jupyter_via_VS_Code
    • Julia_in_Jupyter
    • Stata_in_Jupyter
    • R_in_Jupyter
    • Kallisto
    • TeX_Live
    • LAMMPS
    • LIBSVM
    • Lighter
    • LS-Dyna
    • MAFFT
    • Mathematica
    • MATLAB
    • MEGAHIT
    • MetaBat2
    • Minimap2
    • MMseqs2
    • NAMD
    • NCBI_BLAST
    • NCBI_SRA_Toolkit
    • NetCDF
    • NetLogo
    • Nextflow
    • Nf-core-mag
    • NVIDIA_GPU_Cloud_Containers
    • NGC_Deep_Learning_Example
    • NVIDIA_CUDA_on_Picotte
    • GPU_Jobs_on_Picotte
    • Octave
    • Open_Babel
    • OpenFOAM
    • OpenMM
    • OpenMP
    • OpenSHMEM
    • ORCA
    • ParaView
    • PBSuite
    • Perl
    • PETSc
    • Phyluce
    • PhymmBL
    • PILER
    • PILER-CR
    • PROJ
    • PyRAD
    • Python
    • Python_virtual_environments
    • Anaconda
    • Biopython
    • FEniCS
    • Gensim
    • Keras
    • Kmcuda
    • MPI_for_Python
    • PICRUSt
    • Pypar
    • Scikit-learn
    • QIIME
    • Quantum_Espresso
    • R
    • Racket
    • Ray
    • Rclone
    • Restic
    • Ruby
    • Salmon
    • SAS
    • SCAT
    • Schrodinger
    • SeqLib
    • SeqPrep
    • Singularity
    • Spack
    • SPAdes
    • Stata
    • Strelka2
    • Subread
    • SuiteSparse
    • URMAP
    • TensorFlow
    • Sample_TensorFlow_Datasets
    • Trinity_for_RNA-Seq_De_novo_Assembly
    • VDB
    • Vcftools
    • VinaLC
    • VSEARCH
    • Zlib
    • Zstd
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