Compiling Infernal

Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.[1]

Installed Version

Infernal 1.0.2 and 1111.1.1''' are installed on Proteus. Load the appropriate module file:

infernal/gcc/1.1.1-threads infernal/gcc/1.1.1-mpi infernal/gcc/1.0.1-threads

Use the "threads" version, if in doubt about MPI capability.

Compile

wgetftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz tar xf infernal-1.0.2.tar.gz cd infernal-1.0.2 export CFLAGS="-O3 -march=corei7-avx -mfpmath=sse" module load qiime ./configure --prefix=${QIIMEPREFIX} --enable-mpi --enable-sse --enable-largefile make -j 16 >& Make.out make check >& Make.check.out make install >& Make.install.out

References

[1] Infernal website