Compiling HMMER
HMMER R is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).[1]
Installed Version♯
HMMER 3.1b2 is installed on Proteus. Use the modulefile:
hmmer/3.1b2
Compiling♯
Pre-compiled Versions♯
Pre-compiled versions are available from the HMMER website.[2]
Compiling from Source♯
This uses GSL 2.2.1 installed on Proteus:
module load gsl/gcc/2.2.1
Environment:
export LDFLAGS="${GSLLDFLAGS} -lgsl -lgslcblas"
Configure:
./configure --prefix=/mnt/HA/group/myGrp/software --enable-sse --disable-mpi --enable-largefile --with-gsl --enable-pic
Build:
make
Check:
make check
Install:
make install
Modify PATH:
export PATH=/mnt/HA/group/myGrp/software/bin:${PATH}