Compiling CDBFASTA
CDBFASTA is a FASTA file indexing and retrieval tool from the J. Craig Venter Institute (formerly The Institute for Genomic Research).[1]
Installed Version♯
CDBFASTA 0.99 is installed on Proteus. Use the modulefile:
cdbfasta/gcc/0.99
Documentation♯
Documentation is online here: https://proteusmaster.urcf.drexel.edu/miscdocs/cdbfasta_usage.html
Compiling♯
Modify the makefile to add the following:
BASEFLAGS = -O3 -mavx -mfpmath=sse -Wall ...