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Compiling BCFtools

Prerequisites

  • openblas/dynamic
  • gsl/gcc
  • perl-threaded
  • htslib -- version matching BCFtools version

Configure

./configure --prefix=foo --enable-largefile --enable-bcftools-plugins --enable-perl-filters --enable-libgsl --with-cblas=openblas --with-htslib=$HTSLIBDIR