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          • Slurm - Job Script Example 02a Many Input Files in Separate Directories with Python
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          • Slurm - Job Script Example 09 Mathematica
          • Slurm - Job Script Example 06 Matlab
          • Slurm - Job Script Example 04 Python
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          • Slurm - Job Script Example 05a TensorFlow With Anaconda Python
          • Slurm - Job Script Example 08a TensorFlow multi-GPU using virtualenv
          • Slurm - Job Script Example 05 TensorFlow Singularity
          • Slurm - Job Script Example 08 TensorFlow using virtualenv
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      • Installing or Requesting New Software
        • Compiling ABINIT
        • Compiling ABySS
        • Compiling ANTs
        • Compiling AmberTools
        • Compiling AmpliconNoise
        • Compiling AutoDock Vina
        • Compiling BCFtools
        • Compiling BLASR
        • Compiling Boost
        • Compiling Burrows-Wheeler Aligner
        • Compiling CDBFASTA
        • Compiling CMAQ
        • Compiling CMAQ New
        • Compiling CMake
        • Compiling Caffe
        • Compiling Celera Assembler
        • Compiling Clustal W and Clustal Omega
        • Compiling EnergyPlus
        • Compiling ExaBayes
        • Compiling FFTW
        • Compiling FastTree
        • Compiling GAML
        • Compiling GEOS-Chem Classic
        • Compiling GEOS-Chem High Performance
        • Compiling GROMACS
        • Compiling HDF5
        • Compiling HDF5 1.8
        • Compiling HMMER
        • Compiling High Performance Linpack (HPL)
        • Compiling HyPhy
        • Compiling Infernal
        • Compiling LAMMPS
        • Compiling LAPACK
        • Compiling LLVM
        • Compiling MAGMA
        • Compiling MMC (Mesh-based Monte Carlo)
        • Compiling MUSCLE
        • Compiling Meraculous
        • Compiling Mothur
        • Compiling NAMD
        • Compiling NCBI BLAST
        • Compiling NCBI C++ Toolkit
        • Compiling NCBI NGS
        • Compiling NCBI SRA Toolkit
        • Compiling NetCDF
        • Compiling OpenBLAS
        • Compiling OpenFOAM.com v1806
        • Compiling OpenFOAM.com v2212
        • Compiling OpenFOAM
        • Compiling OpenFOAM.org 10 and dev
        • Compiling OpenFOAM 3.0.x
        • Compiling OpenFOAM 6
        • Compiling OpenMM
        • Compiling OpenMPI
        • Compiling PETSc
        • Compiling ParaView HPC
        • Compiling Prodigal
        • Compiling Python
        • Compiling Quantum Espresso
        • Compiling Quick Start Guide
        • Compiling R
        • Compiling RAxML and ExaML
        • Compiling SPRNG
        • Compiling Samtools
        • Compiling SmashCommunity
        • Compiling Software - A General Guide
        • Compiling SortMeRNA
        • Compiling Tensorflow
        • Compiling Treemix
        • Compiling Trinity RNA-Seq
        • Compiling VASP
        • Compiling VMD
        • Compiling VOTCA
        • Compiling Velvet
        • Compiling VinaLC
        • Compiling Vowpal Wabbit
        • Compiling Xerces C++
        • Compiling clearcut
        • Compiling crass
        • Compiling foam-extend
        • Compiling for AMD with Open64
        • Compiling for Intel with Intel Composer XE, MKL, and Intel MPI
        • Compiling h5py
        • Compiling hapbin
        • Compiling kraken
        • Compiling libcrispr
        • Compiling libtiff
        • Compiling pplacer
        • Compiling with GCC
        • Installing TensorFlow 2.10.1 using pip and venv
        • Installing TensorFlow 2.11.0 using pip and venv
        • Installing TensorFlow 2.9.3 using pip and venv
      • Installed
        • ANSYS Fluent
        • Anaconda
        • Anvi'o
        • Apache Spark
        • Atomsk
        • Augustus
        • AutoDock Vina
        • Autoconf
        • BEAGLE
        • BLAST Databases
        • BWA-MEM2
        • BWA
        • Bazel
        • Bedtools
        • Berkeley Lab Checkpoint Restart
        • Bioconductor
        • Biopython
        • Bowtie
        • CFM-ID
        • CMAQ
        • CRISPR-related Software
        • Caffe
        • Code Profilling
        • Cytoscape
        • DIAMOND
        • Docker
        • EA-utils
        • EnergyPlus
        • Exonerate
        • FEniCS
        • FastQC
        • GEOS-Chem Classic
        • GEOS-Chem ExtData
        • GEOS-Chem High Performance
        • GNU Parallel
        • GNU Scientific Library
        • GPU Jobs on Picotte
        • GPU Memory Limits for BERT
        • GROMACS
        • Gensim
        • Git
        • Grinder
        • GroopM
        • HDF5
        • HPN-SSH
        • IDBA-UD
        • IQ-TREE
        • Intel oneAPI
        • Java
        • Jellyfish
        • Julia
        • Julia in Jupyter
        • Jupyter
        • JupyterLab
        • Jupyter via VS Code
        • Kallisto
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        • LIBSVM
        • LS-Dyna
        • Lighter
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        • MATLAB
        • MEGAHIT
        • MMseqs2
        • Mathematica
        • MetaBat2
        • Minimap2
        • Monitoring
        • NAMD
        • NCBI BLAST
        • NCBI SRA Toolkit
        • NGC Deep Learning Example
        • NVIDIA CUDA on Picotte
        • NVIDIA GPU Cloud Containers
        • NetCDF
        • NetLogo
        • Nextflow
        • Nf-core-mag
        • ORCA
        • Octave
        • OpenFOAM
        • OpenMM
        • OpenMP
        • OpenSHMEM
        • Open Babel
        • PBSuite
        • PETSc
        • PICRUSt
        • PILER-CR
        • PILER
        • PROJ
        • ParaView
        • Perl
        • Phyluce
        • PhymmBL
        • PyRAD
        • Pypar
        • Python
        • Python virtual environments
        • QIIME
        • Quantum Espresso
        • R
        • R in Jupyter
        • Racket
        • Ray
        • Rclone
        • Restic
        • Ruby
        • Samtools
        • SAS
        • SCAT
        • SPAdes
        • Salmon
        • Sample TensorFlow Datasets
        • Schrodinger
        • Scikit-learn
        • SeqLib
        • SeqPrep
        • Seqkit
        • Singularity
        • Spack
        • Stata
        • Stata in Jupyter
        • Statement on Data Loss
        • Strelka2
        • Subread
        • SuiteSparse
        • TeX Live
        • TensorFlow
        • Trinity for RNA-Seq De novo Assembly
        • URMAP
        • VDB
        • VSEARCH
        • Vcftools
        • VinaLC
        • Zlib
        • Zstd
        • AlphaFold
        • COMSOL
        • mkdocs migration
        • MPI for Python
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